Where microbialites grow

Living microbialites and microbial mats are scattered across every continent, in lagoons, lakes, springs and even a mine pit. This atlas maps living microbialites documented around the world, each linked to its source, together with the sites behind the research on this site. Sites studied by the RAW Lab are ringed on the map.

Showing 57 of 57 sites

Featured sites

The places behind the research on this site, plus two landmarks of the fossil record.

Stromatolites growing in Hamelin Pool

RAW Lab site

Hamelin Pool, Shark Bay

Gathaagudu (Shark Bay), Western Australia. Hypersaline marine lagoon.

The world’s most diverse and abundant living marine stromatolites, in water about twice as salty as the open ocean, within a World Heritage Area inscribed in 1991. Smooth, pustular and supratidal mats and columnar stromatolites have been studied here with amplicons, metagenomes, transcriptomes and viromes.

Burns et al. 2004Ruvindy et al. 2016White et al. 2018Wong et al. 2018Wong et al. 2020Kindler et al. 2022

Photo: Paul Harrison, CC BY-SA 3.0, via Wikimedia Commons

Highborne Cay

Exuma Cays, Bahamas. Open-marine stromatolites.

Stromatolites growing in ordinary seawater. Work here showed how cycles of sediment trapping and microbial hardening, tied to sulfur cycling, build millimetre-scale laminae.

Reid, Visscher et al. 2000Visscher et al. 1998

RAW Lab site

Kelly Lake

British Columbia, Canada. Clear, slightly alkaline lake about 20 km from Pavilion Lake.

Metre-scale microbialites and smaller thrombolites, surveyed by the Pavilion Lake Research Project from 2004. Comparisons with its neighbour test which microbial metabolisms leave lasting signatures in carbonate; as in Pavilion Lake, photoautotrophy appears enriched in the microbialites.

Ferris et al. 1997Biosignatures study, Life 2020

RAW Lab site

Clinton Creek

Yukon, Canada. Flooded open-pit asbestos mine.

Rapidly growing microbialites in a mine pit flooded within living memory. Their gene content resembled polar microbial mats more than hot-spring mats.

White et al. 2015Power et al. 2011

Thrombolites just below the water along the Lake Clifton shore

Lake Clifton

Yalgorup National Park, Western Australia. Brackish coastal lake.

A reef-like band of thrombolites, listed as a critically endangered ecological community under state and federal law. Rising nutrients and salinity threaten it; a boardwalk lets visitors look without trampling.

Threatened community profile

Photo: Monkimajik, CC BY-SA 4.0, via Wikimedia Commons

A large stromatolite in Laguna Bacalar

Bacalar Lagoon

Quintana Roo, Mexico. Karstic freshwater lagoon.

Documented as the largest freshwater microbialite occurrence in the world. Tourism and land-use change are altering the lagoon, and visitors standing on microbialites damage them.

Microbiome study, PLOS ONE 2020

Photo: Jiinjung, CC BY-SA 4.0, via Wikimedia Commons

Cuatro Ciénegas

Coahuila, Mexico. Desert spring-fed pools.

An oasis of springs and pools with living stromatolites and mats, and the site of the first metagenomic study of freshwater microbialites.

Breitbart et al. 2009

Laguna La Brava

Salar de Atacama, Chile. Hypersaline lake with oxygen-free mats.

Purple mats that live entirely without oxygen in arsenic-rich, sulfidic water, proposed as an analogue for life in the Archean.

Visscher et al. 2020

Laguna Socompa

Puna, Argentina. High-altitude Andean lake.

Living stromatolites at the foot of Socompa volcano. One yielded Exiguobacterium strain S17, a relative of the Pavilion Lake isolate RW2.

Discussed in White et al. 2019

Guerrero Negro

Baja California Sur, Mexico. Saltern ponds.

One of the most intensively studied hypersaline mats, dominated by Chloroflexi rather than the proteobacteria that dominate Shark Bay.

Wong, Ahmed-Cox and Burns 2016

Kiritimati

Line Islands, Kiribati. Hypersaline atoll lakes.

Mats in the atoll’s lakes are dominated by Bacteroidetes, a reminder that every hypersaline mat assembles its own community.

Wong, Ahmed-Cox and Burns 2016

RAW Lab site

Green Lake

Green Lakes State Park, Fayetteville, New York, USA. Meromictic, hard-water marl lake.

The first meromictic lake described in North America: its deep, mineral-rich water never mixes with the surface. Off Dead Man’s Point, a thrombolitic reef built by coccoid and filamentous cyanobacteria grows on a carbonate platform, and the lake is studied as an analogue for Proterozoic ecosystems. A field site for the RAW and Visscher labs.

Wilhelm and Hewson 2012Frontiers in Microbiology 2023

Microbial mats near Grand Prismatic Spring

Yellowstone hot springs

Wyoming, USA. Hot-spring microbial mats.

Classic phototrophic mats. Their functional potential was distinct from that of the Clinton Creek microbialites.

White et al. 2015

Photo: Daniel Mayer, CC BY-SA 3.0, via Wikimedia Commons

Canadian High Arctic

Nunavut, Canada. Polar microbial mats.

Non-lithifying polar mats whose gene content closely matched that of the subarctic Clinton Creek microbialites.

White et al. 2015

Antarctica

Antarctica. Polar microbial mats.

Antarctic mats were also functionally similar to the Clinton Creek microbialites.

White et al. 2015

Pilbara

Western Australia. Fossil stromatolites, 3.48 and 3.43 billion years old.

The Dresser and Strelley Pool formations preserve some of the oldest widely accepted evidence of life, including stromatolites in ancient hot-spring deposits.

Djokic et al. 2017Allwood et al. 2006

Isua

Greenland. Contested 3.7 billion-year-old structures.

Proposed as stromatolites in 2016 and reinterpreted as deformation features in 2018, a reminder that shape alone does not prove life.

Allwood et al. 2018

Living microbialites around the world

Further living microbialites documented in the literature, each linked to its source. The list is not exhaustive; suggest a site.

Africa

  • Brandsebaai

    West coast of South Africa. Peritidal rock pools.

    The western limit of the peritidal stromatolites that occur along the southern African coast.

    PLOS ONE 2024

  • Cape Morgan and Kei Mouth

    Eastern Cape, South Africa. Peritidal rock pools.

    Where living shore-platform stromatolites were first documented in South Africa, in pools fed by carbonate-rich groundwater.

    PLOS ONE 2024Biogeosciences 2018

  • Cape Recife and Schoenmakerskop

    Gqeberha (Port Elizabeth), South Africa. Peritidal stromatolite pools.

    About 540 peritidal stromatolite pools line a 200 km stretch of this coast, where freshwater seeps meet the sea.

    Journal of African Earth Sciences 2019PLOS ONE 2024

  • Lake Dziani Dzaha

    Mayotte, Indian Ocean. Alkaline volcanic crater lake.

    Stromatolites form in a volcanic crater lake, with Alphaproteobacteria and cyanobacteria playing key roles.

    Gérard et al. 2018

  • Lake Tanganyika

    East African Rift. Deep, ancient rift lake.

    Living and fossil stromatolites occur in this freshwater rift lake.

    Landing and Johnson review

  • Tofo

    Inhambane, Mozambique. Shore platform.

    The eastern limit of shore-platform stromatolites, which grow discontinuously along about 2,300 km of the southern African coast.

    Biogeosciences 2018

Antarctica

  • Lake Joyce

    McMurdo Dry Valleys, Antarctica. Perennially ice-covered lake.

    Calcifying microbialites whose depth distribution still records a 7 m rise in lake level between 1973 and 2009.

    Hawes et al. 2011

  • Lake Untersee

    Queen Maud Land, East Antarctica. Perennially ice-covered lake.

    Large conical stromatolites, up to about half a metre tall and unlithified, built by cyanobacteria under permanent ice.

    Andersen et al. 2011

  • Lake Vanda

    McMurdo Dry Valleys, Antarctica. Perennially ice-covered lake.

    Microbial pinnacles grow from just below the ice to more than 50 m deep.

    Sumner et al. 2016

Asia

  • Lake Salda

    Southwestern Turkey. Alkaline lake on serpentinite.

    Living hydromagnesite stromatolites in a magnesium-rich alkaline lake studied as a Mars analogue.

    Braithwaite and Zedef 1994Gunes et al. 2024

  • Lake Van

    Eastern Turkey. Soda lake.

    Microbialite towers up to 40 m tall, the largest known, built where calcium-rich spring water meets the soda lake.

    Kempe et al. 1991

  • Lakes Nuoertu and Huhejaran

    Badain Jaran Desert, Inner Mongolia, China. Alkaline salt lakes among giant dunes.

    Living mats, lithified microbialites and stromatolitic tufa form where groundwater seeps into alkaline lakes among some of the world’s tallest dunes.

    Hohl and Steiner 2026Arp et al. 1998

  • Petukhovskoe Soda Lake

    Kulunda Steppe, Altai, Russia. Hypersaline soda lake.

    Modern dolomite stromatolites forming as laminated crusts at the lake margin.

    Samylina and Zaytseva 2019

  • Satonda crater lake

    Satonda Island, Indonesia. Crater lake of seawater origin.

    Microbialites grow in a crater lake filled with seawater of increased alkalinity.

    Arp et al. 2003

Europe

  • Isle of Harris

    Outer Hebrides, Scotland, UK. Shore-platform pools.

    Shore-platform stromatolites fed by carbonate-rich runoff on the Atlantic coast.

    Biogeosciences 2018

  • Lagunas de Ruidera

    Castilla-La Mancha, Spain. Karst lakes dammed by tufa.

    A chain of karst lakes holding a great diversity of freshwater stromatolites, one of Europe’s most representative carbonate-precipitating systems.

    Santos et al. 2010

  • Lake Specchio di Venere

    Pantelleria, Italy. Alkaline volcanic crater lake.

    Siliceous stromatolites grow among hydrothermal CO2 vents, alongside calcified microbial mats.

    Cangemi et al. 2010

  • Northeast coast of Northern Ireland

    Northern Ireland, UK. Shore-platform pools.

    Shore-platform stromatolites on rocky coast where carbonate-rich runoff reaches the sea.

    Biogeosciences 2018

  • Río Tinto

    Huelva, Spain. Acidic, iron-rich river.

    Iron microbialites forming in a strongly acidic river, studied as an analogue for possible life on Mars.

    Pei et al. 2026

North and Central America

  • Cayo Coco

    Cuba. Coastal hypersaline lagoon.

    Mineralising microbial mats whose distribution, fabrics and minerals are set by the lagoon’s hydrology.

    Bouton et al. 2016

  • Great Salt Lake

    Utah, USA. Hypersaline terminal lake.

    Microbialites anchor a food web that supports millions of migratory birds, and drought is harming them.

    Lindsay et al. 2020Utah Geological Survey

  • Laguna Providencia

    Puerto Rico. Coastal lagoon.

    Microbial carbonate deposits documented in a 2026 survey of Puerto Rico.

    Rodríguez-Colón et al. 2026

  • Lake Alchichica

    Puebla, Mexico. Alkaline crater lake.

    A magnesium-rich alkaline maar lake ringed by microbialites that shelter an endemic axolotl.

    Kaźmierczak et al. 2011Couradeau et al. 2011

  • Lee Stocking Island

    Exuma Cays, Bahamas. Tidal channels.

    Giant subtidal stromatolites growing in tidal channels of normal-salinity seawater.

    Dill et al. 1986

  • Little Hot Creek

    Long Valley Caldera, California, USA. Hot spring.

    Carbonate-rich dendrolitic cones in hot-spring pools, a modern analogue for how microbialites begin to form.

    Bradley et al. 2017

  • Pyramid Lake

    Nevada, USA. Alkaline lake with thermal springs.

    Microbialite mounds form where thermal springs discharge into the alkaline lake; biofilm polymers control how they grow.

    Arp et al. 1999

  • Storr’s Lake

    San Salvador Island, Bahamas. Hypersaline lake.

    Stromatolitic knobs in a shallow hypersaline lake, a model system for how laminae form and change.

    Dupraz et al. 2013

South America

  • Lagoa Salgada

    Rio de Janeiro state, Brazil. Coastal saline lagoon.

    Living stromatolites form bioherms in this coastal lagoon.

    Spadafora et al. 2010

  • Lagoa Vermelha

    Rio de Janeiro state, Brazil. Coastal hypersaline lagoon.

    Stromatolites of calcium–magnesium carbonate, including dolomite, form in microbial mats in this hypersaline lagoon.

    Spadafora et al. 2010

  • Laguna Negra

    Catamarca Puna, Argentina. High-Andean hypersaline lake.

    An extensive, active microbialite system that has been growing for at least 2,400 years.

    Gomez et al. 2014

  • Laguna Pirata

    Los Roques, Venezuela. Hypersaline coastal lagoon.

    Gypsum-dominated thrombolites accreting in a hypersaline lagoon of the Los Roques archipelago.

    Petrash et al. 2012

  • Laguna Pozo Bravo

    Salar de Antofalla, Argentina. High-Andean salt-flat lake.

    A modern microbialite reef combining thrombolites, dendrolites and stromatolites under intense radiation and volcanic inputs.

    Composite microbialites, Pozo Bravo

  • Laguna Tebenquiche

    Salar de Atacama, Chile. Salt-flat lagoon.

    Microbial mats, gypsum evaporites and carbonate microbialites in a wetland of the Salar de Atacama.

    Farías et al. 2014

  • Lake Sarmiento and Laguna Amarga

    Torres del Paine, Chile. Patagonian alkaline lakes.

    Microbialites ring two lakes in Torres del Paine, and their isotopes record past regional climate.

    Solari et al. 2010

  • Puquios of the Salar de Llamara

    Atacama Desert, Chile. Shallow saline ponds.

    Gypsum domes and stromatolite-like structures colonised by microbes; how much of their growth is biological is still debated.

    Sci. Rep. 2021Sci. Rep. 2023

Australia and Oceania

  • Lake Richmond

    Rockingham, Western Australia. Freshwater lake.

    Thrombolitic microbialites near Perth, studied for their growth history and environmental controls.

    Guerreiro et al. 2015

  • Lake Thetis

    Cervantes, Western Australia. Saline, alkaline coastal lake.

    Living stromatolites with narrow, closely spaced branching columns, extremely rare among modern stromatolites.

    Grey et al. 1990

  • Lakes Vai Lahi and Vai Si’i

    Niuafo’ou, Tonga. Caldera lakes.

    Caldera-lake stromatolites described as genuine modern analogues of Precambrian ones.

    Kazmierczak and Kempe 2006

  • Tikehau atoll

    Tuamotu, French Polynesia. Atoll lagoon.

    Microbialites in a modern lagoon of a coral atoll.

    Sprachta et al. 2001