Publications

Showing 43 of 43 publications

1. 2022

   A cyanobacteria enriched layer of Shark Bay stromatolites reveals a new Acaryochloris strain living in near infrared light

   Johnson MS, Burns BP, Herdean A, Angeloski A, Ralph P, Morris T, Kindler G, Wong HL, Kuzhiumparambil U, Sedger LM, Larkum AWD

   Microorganisms 10:1035

   doi:10.3390/microorganisms10051035

2. 2022

   Genome-resolved metagenomics provides insights into the functional complexity of microbial mats in Blue Holes, Shark Bay

   Kindler GS, Wong HL, Larkum AWD, Johnson M, MacLeod FI, Burns BP

   FEMS Microbiology Ecology 98:fiab158

   doi:10.1093/femsec/fiab158

3. 2022

   Eukarya the chimera: eukaryotes, a secondary innovation of the two domains of life?

   Nobs SJ, MacLeod FI, Wong HL, Burns BP

   Trends in Microbiology 30:421–431

   doi:10.1016/j.tim.2021.11.003

4. 2021

   Between a rock and a soft place: the role of viruses in lithification of modern microbial mats

   White RA III, Visscher PT, Burns BP

   Trends in Microbiology 29(3):204–213

   doi:10.1016/j.tim.2020.06.004

5. 2020

   Functional gene expression in Shark Bay hypersaline microbial mats: adaptive responses

   Campbell MA, Grice K, Visscher PT, Morris T, Wong HL, White RA III, Burns BP, Coolen MJL

   Frontiers in Microbiology 11:560336

   doi:10.3389/fmicb.2020.560336

6. 2020

   Discovery of an abundance of biosynthetic gene clusters in Shark Bay microbial mats

   Chen R, Wong HL, Kindler GS, MacLeod FI, Benaud N, Ferrari BC, Burns BP

   Frontiers in Microbiology 11:1950

   doi:10.3389/fmicb.2020.01950

7. 2020

   Modern arsenotrophic microbial mats provide an analogue for life in the anoxic Archean

   Visscher PT, Gallagher KL, Bouton A, Farias ME, Kurth D, Sancho-Tomás M, Philippot P, Somogyi A, Medjoubi K, Vennin E, Bourillot R, Walter MR, Burns BP, Contreras M, Dupraz C

   Communications Earth & Environment 1:24

   doi:10.1038/s43247-020-00025-2

8. 2020

   Microbial dark matter filling the niche in hypersaline microbial mats

   Wong HL, MacLeod FI, White RA III, Visscher PT, Burns BP

   Microbiome 8:135

   doi:10.1186/s40168-020-00910-0

9. 2019

   Isolation of novel quorum-sensing active bacteria from microbial mats in Shark Bay Australia

   Charlesworth JC, Watters C, Wong HL, Visscher PT, Burns BP

   FEMS Microbiology Ecology 95:fiz035

   doi:10.1093/femsec/fiz035

10. 2019

    Bioinformatic, phylogenetic and chemical analysis of the UV-absorbing compounds scytonemin and mycosporine-like amino acids from the microbial mat communities of Shark Bay, Australia

    D’Agostino PM, Woodhouse JN, Liew HT, Sehnal L, Pickford R, Wong HL, Burns BP, Neilan BA

    Environmental Microbiology 21:702–715

    doi:10.1111/1462-2920.14517

11. 2019

    Asgard archaea: diversity, function, and evolutionary implications in a range of microbiomes

    MacLeod F, Kindler GS, Wong HL, Chen R, Burns BP

    AIMS Microbiology 5:48–61

    doi:10.3934/microbiol.2019.1.48

12. 2019

    The vulnerability of microbial ecosystems in a changing climate: potential impact in Shark Bay

    Reinold M, Wong HL, MacLeod FI, Meltzer J, Thompson A, Burns BP

    Life 9:71

    doi:10.3390/life9030071

13. 2019

    The complete genome and physiological analysis of the eurythermal firmicute Exiguobacterium chiriqhucha strain RW2 isolated from a freshwater microbialite, widely adaptable to broad thermal, pH, and salinity ranges

    White RA III, Soles SA, Gavelis G, Gosselin E, Slater GF, Lim DSS, Leander B, Suttle CA

    Frontiers in Microbiology 9:3189

    doi:10.3389/fmicb.2018.03189

14. 2018

    Reassessing evidence of life in 3,700-million-year-old rocks of Greenland

    Allwood AC, et al.

    Nature

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15. 2018

    Correlation of bio-optical properties with photosynthetic pigment and microorganism distribution in microbial mats from Hamelin Pool, Australia

    Fisher A, Wangpraseurt D, Larkum AWD, Johnson M, Kühl M, Chen M, Wong HL, Burns BP

    FEMS Microbiology Ecology 95:fiy219

    doi:10.1093/femsec/fiy219

16. 2018

    The complete genome and physiological analysis of the microbialite-dwelling Agrococcus pavilionensis sp. nov; reveals genetic promiscuity and predicted adaptations to environmental stress

    White RA III, Gavelis G, Soles SA, Gosselin E, Slater GF, Lim DSS, Leander B, Suttle CA

    Frontiers in Microbiology 9:2180

    doi:10.3389/fmicb.2018.02180

17. 2018

    Viral communities of Shark Bay modern stromatolites

    White RA III, Wong HL, Ruvindy R, Neilan BA, Burns BP

    Frontiers in Microbiology 9:1223

    doi:10.3389/fmicb.2018.01223

18. 2018

    Disentangling the drivers of functional complexity at the metagenomic level in Shark Bay microbial mat microbiomes

    Wong HL, White RA III, Visscher PT, Charlesworth JC, Vázquez-Campos X, Burns BP

    The ISME Journal 12:2619–2639

    doi:10.1038/s41396-018-0208-8

19. 2017

    Earliest signs of life on land preserved in ca. 3.5 Ga hot spring deposits

    Djokic T, Van Kranendonk MJ, et al.

    Nature Communications 8:15263

    doi:10.1038/ncomms15263

20. 2017

    Dynamics of archaea at fine spatial scales in Shark Bay mat microbiomes

    Wong HL, Visscher PT, White RA III, Smith D-L, Patterson MM, Burns BP

    Scientific Reports 7:46160

    doi:10.1038/srep46160

21. 2016

    Unravelling core microbial metabolisms in the hypersaline microbial mats of Shark Bay using high-throughput metagenomics

    Ruvindy R, White RA III, Neilan BA, Burns BP

    The ISME Journal 10:183–196

    doi:10.1038/ismej.2015.87

22. 2016

    Metagenomic analysis suggests modern freshwater microbialites harbor a distinct core microbial community

    White RA III, Chan AM, Gavelis GS, Leander BS, Brady AL, Slater GF, Lim DSS, Suttle CA

    Frontiers in Microbiology 6:1531

    doi:10.3389/fmicb.2015.01531

23. 2016

    Molecular ecology of hypersaline microbial mats: current insights and new directions

    Wong HL, Ahmed-Cox A, Burns BP

    Microorganisms 4:6

    doi:10.3390/microorganisms4010006

24. 2015

    Metagenomic analysis reveals that modern microbialites and polar microbial mats have similar taxonomic and functional potential

    White RA III, Power IM, Dipple GM, Southam G, Suttle CA

    Frontiers in Microbiology 6:966

    doi:10.3389/fmicb.2015.00966

25. 2015

    Niche differentiation of bacterial communities at a millimeter scale in Shark Bay microbial mats

    Wong HL, Smith D-L, Visscher PT, Burns BP

    Scientific Reports 5:15607

    doi:10.1038/srep15607

26. 2014

    Metagenomic and genomic analyses of modern freshwater microbialites: unmasking a community of complex metabolic potential

    White RA III

    PhD dissertation, University of British Columbia

    UBC Open Collections

27. 2013

    First draft genome sequence from a member of the genus Agrococcus, isolated from modern microbialites

    White RA III, Grassa CJ, Suttle CA

    Genome Announcements 1(4):e00391-13

    PubMed Central

28. 2013

    Draft genome sequence of Exiguobacterium pavilionensis strain RW-2, with wide thermal, salinity, and pH tolerance, isolated from modern freshwater microbialites

    White RA III, Grassa CJ, Suttle CA

    Genome Announcements 1(4):e00597-13

    PubMed Central

29. 2012

    Characterization of thrombolitic bioherm cyanobacterial assemblages in a meromictic marl lake (Fayetteville Green Lake, New York)

    Wilhelm MB, Hewson I

    Geomicrobiology Journal 29(8)

    doi:10.1080/01490451.2011.619635

30. 2011

    Modern carbonate microbialites from an asbestos open pit pond, Yukon, Canada

    Power IM, Wilson SA, Dipple GM, Southam G

    Geobiology 9:180–195

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31. 2009

    Bacterial, archaeal and eukaryotic diversity of smooth and pustular microbial mat communities in the hypersaline lagoon of Shark Bay

    Allen MA, Goh F, Burns BP, Neilan BA

    Geobiology 7:82–96

    doi:10.1111/j.1472-4669.2008.00187.x

32. 2009

    Metagenomic and stable isotopic analyses of modern freshwater microbialites in Cuatro Ciénegas, Mexico

    Breitbart M, et al.

    Environmental Microbiology

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33. 2009

    Processes of carbonate precipitation in modern microbial mats

    Dupraz C, Reid RP, Braissant O, Decho AW, Norman RS, Visscher PT

    Earth-Science Reviews 96:141–162

    doi:10.1016/j.earscirev.2008.10.005

34. 2009

    Determining the specific microbial populations and their spatial distribution within the stromatolite ecosystem of Shark Bay

    Goh F, Allen MA, Leuko S, Kawaguchi T, Decho AW, Burns BP, Neilan BA

    The ISME Journal

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35. 2006

    Stromatolite reef from the Early Archaean era of Australia

    Allwood AC, et al.

    Nature

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36. 2005

    Microbial lithification in marine stromatolites and hypersaline mats

    Dupraz C, Visscher PT

    Trends in Microbiology 13:429–438

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37. 2004

    Microbial diversity of extant stromatolites in the hypersaline marine environment of Shark Bay, Australia

    Burns BP, Goh F, Allen M, Neilan BA

    Environmental Microbiology 6:1096–1101

    doi:10.1111/j.1462-2920.2004.00651.x

38. 2000

    The role of microbes in accretion, lamination and early lithification of modern marine stromatolites

    Reid RP, Visscher PT, Decho AW, Stolz JF, Bebout BM, Dupraz C, et al.

    Nature 406:989–992

    doi:10.1038/35023158

39. 2000

    Microscale observations of sulfate reduction: correlation of microbial activity with lithified micritic laminae in modern marine stromatolites

    Visscher PT, Reid RP, Bebout BM

    Geology 28:919–922

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40. 1998

    Formation of lithified micritic laminae in modern marine stromatolites (Bahamas): the role of sulfur cycling

    Visscher PT, Reid RP, Bebout BM, et al.

    American Mineralogist 83:1482

    Full text (PDF)

41. 1997

    Modern freshwater microbialites from Kelly Lake, British Columbia, Canada

    Ferris FG, Thompson JB, Beveridge TJ

    PALAIOS 12:213–219

    doi:10.2307/3515423

42. 1987

    Microbialites: organosedimentary deposits of benthic microbial communities

    Burne RV, Moore LS

    PALAIOS

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43. 1961

    Cryptozoon and associate stromatolites from the Recent, Shark Bay, Western Australia

    Logan BW

    Journal of Geology

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